CVE-2026-31965
Publication date 18 March 2026
Last updated 10 July 2026
Ubuntu priority
Description
HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. In the `cram_decode_slice()` function called while reading CRAM records, validation of the reference id field occurred too late, allowing two out of bounds reads to occur before the invalid data was detected. The bug does allow two values to be leaked to the caller, however as the function reports an error it may be difficult to exploit them. It is also possible that the program will crash due to trying to access invalid memory. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.
Status
| Package | Ubuntu Release | Status |
|---|---|---|
| htslib | 26.04 LTS resolute |
Needs evaluation
|
| 24.04 LTS noble |
Needs evaluation
|
|
| 22.04 LTS jammy |
Needs evaluation
|
|
| 20.04 LTS focal |
Needs evaluation
|
|
| 18.04 LTS bionic |
Needs evaluation
|
|
| 16.04 LTS xenial | Ignored end of ESM support, was needs-triage | |
| 14.04 LTS trusty |
Needs evaluation
|
Severity score breakdown
CVSS version:
Base score
6.9 · Medium
Vector: CVSS:4.0/AV:N/AC:L/AT:N/PR:N/UI:N/VC:L/VI:N/VA:L/SC:N/SI:N/SA:N
Base score
8.2 · High
Vector: CVSS:3.1/AV:N/AC:L/PR:N/UI:N/S:U/C:L/I:N/A:H